If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ), 'gf_id' => 'HOM05D000758', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000758' ), 'data_identifier' => 'HOM05D000758', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000758', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '771', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02210' => 'bna', 'A03p06200' => 'bna', 'A03p36050' => 'bna', 'A05p36910' => 'bna', 'A05p39670' => 'bna', 'A08p35600' => 'bna', 'A10p06050' => 'bna', 'A10p16620' => 'bna', 'A10p16640' => 'bna', 'A10p16650' => 'bna', 'A10p24540' => 'bna', 'A10p33480' => 'bna', 'Aa31LG1G11790' => 'aar', 'Aa31LG1G22620' => 'aar', 'Aa31LG3G1790' => 'aar', 'Aa31LG3G90' => 'aar', 'Aa31LG4G15590' => 'aar', 'Aa31LG4G15600' => 'aar', 'Aa31sc24G80' => 'aar', 'Aa31sc510G30' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.196' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4787' => 'aag', 'Actinidia02941' => 'ach', 'Actinidia07024' => 'ach', 'Actinidia07025' => 'ach', 'Actinidia07741' => 'ach', 'Actinidia13148' => 'ach', 'Actinidia13149' => 'ach', 'Actinidia13884' => 'ach', 'Actinidia14040' => 'ach', 'Actinidia23930' => 'ach', 'Actinidia23931' => 'ach', 'Actinidia29232' => 'ach', 'Actinidia34416' => 'ach', 'Actinidia36894' => 'ach', 'Actinidia37192' => 'ach', 'Actinidia37193' => 'ach', 'Actinidia37194' => 'ach', 'Ah.08g219700' => 'amhyb', 'Ah.10g036870' => 'amhyb', 'Ah.15g097650' => 'amhyb', 'Ah.15g097680' => 'amhyb', 'AL1G17720' => 'aly', 'AL3G18180' => 'aly', 'AL3G20430' => 'aly', 'AL3G24200' => 'aly', 'AL5G25480' => 'aly', 'AL658U10010' => 'aly', 'AL6G11320' => 'aly', 'AL6G24440' => 'aly', 'AL8G35890' => 'aly', 'AL8G35900' => 'aly', 'Aqoxy1G00919' => 'aox', 'Aqoxy1G00921' => 'aox', 'Aqoxy2G02238' => 'aox', 'Aqoxy2G02239' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09ZGYD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.18CGRH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1SV5F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q6FKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2XX8JK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.53UM4C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7LFC8T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93WSV1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AZZ8MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FE3PYB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H02YA3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2K856' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H4J3HI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITS9LF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J8X087' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KAWM4X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9TR2Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P4AZJC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RALB70' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RV7PTT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WX6LME' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZEE9IF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZFP9XM' => 'arhy', 'AT1G07540' => 'ath', 'AT3G09300' => 'ath', 'AT3G12560' => 'ath', 'AT3G46590' => 'ath', 'AT3G53790' => 'ath', 'AT5G02100' => 'ath', 'AT5G13820' => 'ath', 'AT5G59420' => 'ath', 'AT5G59430' => 'ath', 'ATR0559G022' => 'atr', 'ATR0559G161' => 'atr', 'ATR0559G242' => 'atr', 'ATR0680G302' => 'atr', 'ATR0763G023' => 'atr', 'Atru.chr12.424' => 'acertr', 'Atru.chr3.3948' => 'acertr', 'Atru.chr3.3982' => 'acertr', 'Atru.chr3.3985' => 'acertr', 'Atru.chr8.1986' => 'acertr', 'Atru.chr8.1987' => 'acertr', 'AUR62001769' => 'cqu', 'AUR62001770' => 'cqu', 'AUR62009557' => 'cqu', 'AUR62009558' => 'cqu', 'AUR62012108' => 'cqu', 'AUR62017127' => 'cqu', 'AUR62035683' => 'cqu', 'AUR62039363' => 'cqu', 'BcaB01g01004' => 'bca', 'BcaB01g01005' => 'bca', 'BcaB01g05334' => 'bca', 'BcaB02g06731' => 'bca', 'BcaB03g13388' => 'bca', 'BcaB04g21070' => 'bca', 'BcaB06g25531' => 'bca', 'BcaB08g36259' => 'bca', 'BcaB08g36260' => 'bca', 'BcaC01g04225' => 'bca', 'BcaC01g04227' => 'bca', 'BcaC02g09130' => 'bca', 'BcaC04g19077' => 'bca', 'BcaC04g19774' => 'bca', 'BcaC04g19775' => 'bca', 'BcaC04g19777' => 'bca', 'BcaC04g24251' => 'bca', 'BcaC05g24690' => 'bca', 'BcaC05g29257' => 'bca', 'BcaC05g29523' => 'bca', 'BcaC05g29658' => 'bca', 'BcaC09g48017' => 'bca', 'BcaC09g48070' => 'bca', 'BcaC09g48071' => 'bca', 'BcaC09g48252' => 'bca', 'BcaNung04181' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00080' => 'bna', 'BolC1t05203H' => 'bol', 'BolC1t05461H' => 'bol', 'BolC2t06591H' => 'bol', 'BolC3t13222H' => 'bol', 'BolC3t16638H' => 'bol', 'BolC5t29325H' => 'bol', 'BolC5t34202H' => 'bol', 'BolC5t34520H' => 'bol', 'BolC8t47111H' => 'bol', 'BolC8t50875H' => 'bol', 'BolC9t58043H' => 'bol', 'BolC9t58046H' => 'bol', 'BolC9t59164H' => 'bol', 'BolC9t60172H' => 'bol', 'BraA01t04128Z' => 'bra', 'BraA01t04304Z' => 'bra', 'BraA02t05193Z' => 'bra', 'BraA03t09954Z' => 'bra', 'BraA03t12776Z' => 'bra', 'BraA04t16286Z' => 'bra', 'BraA05t22490Z' => 'bra', 'BraA05t22749Z' => 'bra', 'BraA08t35466Z' => 'bra', 'BraA10t42867Z' => 'bra', 'BraA10t43745Z' => 'bra', 'BraA10t43746Z' => 'bra', 'BraA10t44518Z' => 'bra', 'BraA10t45378Z' => 'bra', 'C01p52630' => 'bna', 'C02p06450' => 'bna', 'C03p07210' => 'bna', 'C03p43690' => 'bna', 'C04p38770' => 'bna', 'C05p05540' => 'bna', 'C05p55360' => 'bna', 'C05p58710' => 'bna', 'C08p03130' => 'bna', 'C08p32650' => 'bna', 'C09p51820' => 'bna', 'C09p63280' => 'bna', 'C09p74380' => 'bna', 'CAN.G1013.32' => 'can', 'CAN.G1366.18' => 'can', 'CAN.G250.9' => 'can', 'CAN.G324.10' => 'can', 'CAN.G394.65' => 'can', 'CANSAT35G1918' => 'cansat', 'CANSAT54G2131' => 'cansat', 'CANSAT54G2294' => 'cansat', 'CANSAT56G1503' => 'cansat', 'CARHR007310' => 'chi', 'CARHR060400' => 'chi', 'CARHR083660' => 'chi', 'CARHR087060' => 'chi', 'CARHR155220' => 'chi', 'CARHR163690' => 'chi', 'CARHR180840' => 'chi', 'CARHR199620' => 'chi', 'CARHR211260' => 'chi', 'CARHR285790' => 'chi', 'CARHR285800' => 'chi', 'Carub.0001s0686' => 'cru', 'Carub.0003s0841' => 'cru', 'Carub.0003s1190' => 'cru', 'Carub.0005s1286' => 'cru', 'Carub.0005s2037' => 'cru', 'Carub.0006s0094' => 'cru', 'Carub.0006s1200' => 'cru', 'Carub.0008s2009' => 'cru', 'Carub.0008s2010' => 'cru', 'Ca_01318_v3' => 'car', 'Ca_05885_v3' => 'car', 'Ca_07555_v3' => 'car', 'Ca_07556_v3' => 'car', 'Ca_07557_v3' => 'car', 'Ca_08169_v3' => 'car', 'Ca_17111_v3' => 'car', 'Ca_19149_v3' => 'car', 'CBR_g19762' => 'cbr', 'CBR_g8578' => 'cbr', 'Cc01_g13030' => 'ccan', 'Cc01_g13040' => 'ccan', 'Cc02_g07660' => 'ccan', 'Cc06_g02540' => 'ccan', 'CDE02G0406' => 'cde', 'CDE02G2558' => 'cde', 'CDE02G3130' => 'cde', 'CDE07G1471' => 'cde', 'CDE08G1220' => 'cde', 'CDE09G0732' => 'cde', 'CDE09G0769' => 'cde', 'Cfa001457' => 'cfa', 'Cfa011518' => 'cfa', 'Cfa011519' => 'cfa', 'Cfa017364' => 'cfa', 'Cfa017365' => 'cfa', 'Ciclev10011693m.g' => 'ccl', 'Ciclev10013507m.g' => 'ccl', 'Ciclev10027927m.g' => 'ccl', 'Ciclev10030878m.g' => 'ccl', 'CiPaw.01G288800' => 'cil', 'CiPaw.02G185100' => 'cil', 'CiPaw.09G194000' => 'cil', 'CiPaw.09G194100' => 'cil', 'CiPaw.10G146200' => 'cil', 'CiPaw.10G146300' => 'cil', 'CiPaw.13G092400' => 'cil', 'CiPaw.13G092500' => 'cil', 'CiPaw.14G067700' => 'cil', 'CiPaw.14G067800' => 'cil', 'ClCG03G001390' => 'cla', 'ClCG03G001400' => 'cla', 'ClCG07G003440' => 'cla', 'COL.COLO4_14785' => 'col', 'COL.COLO4_14786' => 'col', 'COL.COLO4_18529' => 'col', 'COL.COLO4_18531' => 'col', 'Cpa.g.sc1.421' => 'cpa', 'Cpa.g.sc169.26' => 'cpa', 'Cpa.g.sc81.127' => 'cpa', 'Cpa.g.sc81.128' => 'cpa', 'Cre03.g199759' => 'cre', 'Cre16.g670050' => 'cre', 'CsaV3_1G034390' => 'csa', 'CsaV3_1G034410' => 'csa', 'CsaV3_5G008180' => 'csa', 'CsaV3_6G016740' => 'csa', 'CSS0004039' => 'camsi', 'CSS0005261' => 'camsi', 'CSS0010319' => 'camsi', 'CSS0023153' => 'camsi', 'CSS0023322' => 'camsi', 'CSS0038775' => 'camsi', 'CSS0041007' => 'camsi', 'CSS0049551' => 'camsi', 'DCAR_005963' => 'dca', 'DCAR_007442' => 'dca', 'DCAR_010402' => 'dca', 'DCAR_011714' => 'dca', 'DCAR_015105' => 'dca', 'DCAR_015896' => 'dca', 'DCAR_025295' => 'dca', 'DCAR_027607' => 'dca', 'Dinv00886' => 'din', 'Dinv00887' => 'din', 'Dinv04180' => 'din', 'Dinv04181' => 'din', 'Dinv04183' => 'din', 'Dinv15860' => 'din', 'Dinv17022' => 'din', 'Dinv26029' => 'din', 'Dinv35589' => 'din', 'Dinv42970' => 'din', 'Dinv43129' => 'din', 'Duzib093G1170' => 'dzi', 'Duzib114G0062' => 'dzi', 'Duzib128G1598' => 'dzi', 'Duzib150G1153' => 'dzi', 'Duzib168G0294' => 'dzi', 'Duzib168G0354' => 'dzi', 'Duzib170G0081' => 'dzi', 'ECA232G2448' => 'eca', 'ECA233G1173' => 'eca', 'ECA236G0187' => 'eca', 'ECA236G1393' => 'eca', 'ECA238G2199' => 'eca', 'ECA240G2865' => 'eca', 'ECA248G1165' => 'eca', 'EL10Ac2g04732' => 'bvu', 'EL10Ac7g16035' => 'bvu', 'EL10Ac7g16036' => 'bvu', 'EL10As1g23056' => 'bvu', 'Eucgr.A01280' => 'egr', 'Eucgr.B02351' => 'egr', 'Eucgr.B02352' => 'egr', 'Eucgr.J01245' => 'egr', 'FAN01G1782' => 'fan', 'FAN01G3122' => 'fan', 'FAN02G1919' => 'fan', 'FAN02G2637' => 'fan', 'FAN03G1477' => 'fan', 'FAN05G1469' => 'fan', 'FAN05G4079' => 'fan', 'FAN05G5217' => 'fan', 'FAN06G1191' => 'fan', 'FAN06G2434' => 'fan', 'FAN09G2206' => 'fan', 'FAN09G3665' => 'fan', 'FAN10G1936' => 'fan', 'FAN10G3188' => 'fan', 'FAN11G3031' => 'fan', 'FAN11G3755' => 'fan', 'FAN14G2175' => 'fan', 'FAN14G4397' => 'fan', 'FAN16G2429' => 'fan', 'FAN16G2571' => 'fan', 'FAN16G2884' => 'fan', 'FAN21G1470' => 'fan', 'FAN21G2472' => 'fan', 'FAN25G0218' => 'fan', 'FAN25G3214' => 'fan', 'FvH4_3g36500' => 'fve', 'FvH4_3g36520' => 'fve', 'FvH4_6g13540' => 'fve', 'FvH4_6g13550' => 'fve', 'FvH4_7g22710' => 'fve', 'Glyma.07G132900' => 'gma', 'Glyma.07G133000' => 'gma', 'Glyma.11G138700' => 'gma', 'Glyma.11G138800' => 'gma', 'Glyma.11G219500' => 'gma', 'Glyma.12G062300' => 'gma', 'Glyma.12G062400' => 'gma', 'Glyma.13G336900' => 'gma', 'Glyma.13G337100' => 'gma', 'Glyma.15G037300' => 'gma', 'Glyma.15G037400' => 'gma', 'Glyma.18G037900' => 'gma', 'Glyma.18G182000' => 'gma', 'Glyma.18G182400' => 'gma', 'Gohir.A03G043300' => 'ghi', 'Gohir.A03G043400' => 'ghi', 'Gohir.A05G094600' => 'ghi', 'Gohir.A05G094700' => 'ghi', 'Gohir.A06G166400' => 'ghi', 'Gohir.A09G155100' => 'ghi', 'Gohir.A09G155200' => 'ghi', 'Gohir.A10G220500' => 'ghi', 'Gohir.A13G018200' => 'ghi', 'Gohir.D01G114700' => 'ghi', 'Gohir.D03G124000' => 'ghi', 'Gohir.D05G095000' => 'ghi', 'Gohir.D05G095040' => 'ghi', 'Gohir.D05G095160' => 'ghi', 'Gohir.D05G208400' => 'ghi', 'Gohir.D06G171900' => 'ghi', 'Gohir.D07G221500' => 'ghi', 'Gohir.D09G058750' => 'ghi', 'Gohir.D09G150700' => 'ghi', 'Gohir.D09G150800' => 'ghi', 'Gohir.D10G232700' => 'ghi', 'Gohir.D11G200600' => 'ghi', 'Gohir.D11G203550' => 'ghi', 'Gohir.D13G019200' => 'ghi', 'Gorai.001G255800' => 'gra', 'Gorai.003G130700' => 'gra', 'Gorai.006G172000' => 'gra', 'Gorai.006G172100' => 'gra', 'Gorai.009G098300' => 'gra', 'Gorai.009G098400' => 'gra', 'Gorai.010G200900' => 'gra', 'Gorai.011G266100' => 'gra', 'Gorai.013G021300' => 'gra', 'GSVIVG01016524001' => 'vvi', 'GSVIVG01024936001' => 'vvi', 'GSVIVG01024937001' => 'vvi', 'GSVIVG01034156001' => 'vvi', 'GSVIVG01034158001' => 'vvi', 'HanXRQChr02g0033201' => 'han', 'HanXRQChr03g0093041' => 'han', 'HanXRQChr04g0106011' => 'han', 'HanXRQChr05g0135051' => 'han', 'HanXRQChr06g0178961' => 'han', 'HanXRQChr07g0189581' => 'han', 'HanXRQChr07g0201401' => 'han', 'HanXRQChr08g0220911' => 'han', 'HanXRQChr09g0249961' => 'han', 'HanXRQChr12g0369571' => 'han', 'HanXRQChr13g0423231' => 'han', 'HanXRQChr14g0430791' => 'han', 'HanXRQChr16g0500651' => 'han', 'Haze_17083' => 'cav', 'Haze_20806' => 'cav', 'Haze_20807' => 'cav', 'Haze_24116' => 'cav', 'Haze_24117' => 'cav', 'Hma1.2p1_0615F.1_g189855' => 'hma', 'Hma1.2p1_0936F.1_g238790' => 'hma', 'Hma1.2p1_1399F.1_g280870' => 'hma', 'Hma1.2p1_1420F.1_g282320' => 'hma', 'HPP92_019245' => 'vpl', 'HPP92_019835' => 'vpl', 'HPP92_026922' => 'vpl', 'Hund04943' => 'sun', 'Hund13777' => 'sun', 'Hund16079' => 'sun', 'Hund18897' => 'sun', 'Hund18898' => 'sun', 'Lalb_Chr01g0003601' => 'lal', 'Lalb_Chr01g0003621' => 'lal', 'Lalb_Chr03g0026551' => 'lal', 'Lalb_Chr03g0026561' => 'lal', 'Lalb_Chr03g0042301' => 'lal', 'Lalb_Chr03g0042311' => 'lal', 'Lalb_Chr04g0251171' => 'lal', 'Lalb_Chr10g0104591' => 'lal', 'Lalb_Chr15g0084701' => 'lal', 'Lalb_Chr17g0346251' => 'lal', 'Lalb_Chr18g0053221' => 'lal', 'Lalb_Chr19g0125281' => 'lal', 'Lalb_Chr24g0394081' => 'lal', 'Lj1A939T62' => 'lonja', 'Lj1C149G8' => 'lonja', 'Lj1g0017865' => 'lja', 'Lj1g0020666' => 'lja', 'Lj2A1065T24' => 'lonja', 'Lj2A93T88' => 'lonja', 'Lj2C1065G2' => 'lonja', 'Lj3A966G53' => 'lonja', 'Lj3C966G8' => 'lonja', 'Lj3g0015825' => 'lja', 'Lj3g0017284' => 'lja', 'Lj3g0023191' => 'lja', 'Lj6g0024837' => 'lja', 'Lj8A83T57' => 'lonja', 'Lsat_1_v5_gn_1_107261' => 'lsa', 'Lsat_1_v5_gn_1_59480' => 'lsa', 'Lsat_1_v5_gn_2_118901' => 'lsa', 'Lsat_1_v5_gn_2_62980' => 'lsa', 'Lsat_1_v5_gn_2_82780' => 'lsa', 'Lsat_1_v5_gn_3_126481' => 'lsa', 'Lsat_1_v5_gn_3_21020' => 'lsa', 'Lsat_1_v5_gn_4_165780' => 'lsa', 'Lsat_1_v5_gn_5_169961' => 'lsa', 'Lsat_1_v5_gn_5_24500' => 'lsa', 'Lsat_1_v5_gn_7_12200' => 'lsa', 'Lsat_1_v5_gn_8_15301' => 'lsa', 'Lsat_1_v5_gn_8_73881' => 'lsa', 'Lsat_1_v5_gn_9_66001' => 'lsa', 'Manes.01G172100' => 'mes', 'Manes.01G172200' => 'mes', 'Manes.01G172300' => 'mes', 'Manes.02G131166' => 'mes', 'Manes.02G131300' => 'mes', 'Manes.07G117300' => 'mes', 'Manes.10G029300' => 'mes', 'Mapoly0020s0142' => 'mpo', 'Mapoly0043s0095' => 'mpo', 'MBI01_g10023_MAGBIO' => 'mbi', 'MBI05_g28378_MAGBIO' => 'mbi', 'MBI05_g28382_MAGBIO' => 'mbi', 'MBI10_g22590_MAGBIO' => 'mbi', 'MBI14_g12117_MAGBIO' => 'mbi', 'MBI14_g12119_MAGBIO' => 'mbi', 'MD01G1135700' => 'mdo', 'MD03G1089900' => 'mdo', 'MD03G1090000' => 'mdo', 'MD04G1130200' => 'mdo', 'MD04G1130300' => 'mdo', 'MD07G1200400' => 'mdo', 'MD11G1099200' => 'mdo', 'MD11G1099300' => 'mdo', 'MD12G1143300' => 'mdo', 'MD12G1143400' => 'mdo', 'Medtr2g097290' => 'mtr', 'Medtr3g054960' => 'mtr', 'Medtr3g067935' => 'mtr', 'Medtr4g064110' => 'mtr', 'Medtr5g080010' => 'mtr', 'Medtr7g061830' => 'mtr', 'Medtr7g061840' => 'mtr', 'MELO3C020620.2' => 'cme', 'MELO3C020621.2' => 'cme', 'MELO3C023869.2' => 'cme', 'MELO3C025905.2' => 'cme', 'Migut.D02080' => 'egut', 'Migut.D02081' => 'egut', 'Migut.F00779' => 'egut', 'Migut.L01951' => 'egut', 'MSTRG.18569' => 'ama', 'MSTRG.21208' => 'ama', 'MSTRG.21209' => 'ama', 'MSTRG.279' => 'ama', 'MSTRG.8257' => 'ama', 'Nitab4.5_0000042g0050' => 'nta', 'Nitab4.5_0000202g0070' => 'nta', 'Nitab4.5_0000216g0340' => 'nta', 'Nitab4.5_0000272g0060' => 'nta', 'Nitab4.5_0000463g0100' => 'nta', 'Nitab4.5_0001002g0020' => 'nta', 'Nitab4.5_0001097g0040' => 'nta', 'Nitab4.5_0001326g0080' => 'nta', 'Nitab4.5_0002872g0040' => 'nta', 'Nitab4.5_0003943g0020' => 'nta', 'Nitab4.5_0004074g0040' => 'nta', 'Nitab4.5_0007132g0010' => 'nta', 'Nitab4.5_0008900g0010' => 'nta', 'Nitab4.5_0009749g0020' => 'nta', 'Nn2g11141' => 'nnu', 'Nn2g11144' => 'nnu', 'Nn2g13375' => 'nnu', 'Nn2g13376' => 'nnu', 'Oeu002425.1' => 'oeu', 'Oeu002427.1' => 'oeu', 'Oeu004159.1' => 'oeu', 'Oeu004160.1' => 'oeu', 'Oeu004161.1' => 'oeu', 'Oeu016528.1' => 'oeu', 'Oeu017399.2' => 'oeu', 'Oeu026707.1' => 'oeu', 'Oeu037450.1' => 'oeu', 'Oeu046391.1' => 'oeu', 'Os02g0817800' => 'osa', 'Os03g0274000' => 'osa', 'Os03g0274300' => 'osa', 'Peaxi162Scf00094g00116' => 'pax', 'Peaxi162Scf00122g00157' => 'pax', 'Peaxi162Scf00658g00088' => 'pax', 'Peaxi162Scf00760g00326' => 'pax', 'Peaxi162Scf00774g00021' => 'pax', 'Peaxi162Scf00886g00021' => 'pax', 'PGR044G1705' => 'pgr', 'PGR102G0552' => 'pgr', 'PGR102G0938' => 'pgr', 'PGR119G0068' => 'pgr', 'PGR142G0792' => 'pgr', 'PGSC0003DMG400002138' => 'stu', 'PGSC0003DMG400006353' => 'stu', 'PGSC0003DMG400023432' => 'stu', 'PGSC0003DMG400030324' => 'stu', 'PGSC0003DMG401011006' => 'stu', 'Phvul.001G232700' => 'pvu', 'Phvul.008G098600' => 'pvu', 'Phvul.008G103000' => 'pvu', 'Phvul.011G063400' => 'pvu', 'Phvul.011G063500' => 'pvu', 'Phvul.L006343' => 'pvu', 'Phvul.L006443' => 'pvu', 'Potri.001G241600' => 'ptr', 'Potri.006G086400' => 'ptr', 'Potri.006G086500' => 'ptr', 'Potri.008G057300' => 'ptr', 'Potri.009G032000' => 'ptr', 'Potri.010G202400' => 'ptr', 'Pp3c17_13470' => 'ppa', 'Pp3c17_770' => 'ppa', 'Pp3c18_7270' => 'ppa', 'Pp3c18_7410' => 'ppa', 'Pp3c19_15950' => 'ppa', 'Pp3c21_13740' => 'ppa', 'Pp3c21_13990' => 'ppa', 'PRCOL_00005803' => 'pco', 'Prupe.2G237100' => 'ppe', 'Prupe.6G074100' => 'ppe', 'Prupe.6G074200' => 'ppe', 'Prupe.6G256800' => 'ppe', 'Prupe.6G256900' => 'ppe', 'Psat2g040240' => 'psa', 'Psat3g138760' => 'psa', 'Psat3g138840' => 'psa', 'Psat5g123040' => 'psa', 'Psat5g286760' => 'psa', 'Psat7g215040' => 'psa', 'PSO017G6851' => 'pso', 'PSO063G2051' => 'pso', 'PSO063G2251' => 'pso', 'PSO063G2845' => 'pso', 'PSO063G2942' => 'pso', 'PSO135G0901' => 'pso', 'PSO151G0032' => 'pso', 'PSO151G0040' => 'pso', 'PSO151G0094' => 'pso', 'PSO151G0207' => 'pso', 'PSO210G2820' => 'pso', 'PSO339G1970' => 'pso', 'PSO339G2542' => 'pso', 'PSO339G3709' => 'pso', 'PSO339G3861' => 'pso', 'PSO339G5260' => 'pso', 'PSO339G5664' => 'pso', 'PSO357G0254' => 'pso', 'PSO384G4271' => 'pso', 'PSO384G4972' => 'pso', 'PSO541G2233' => 'pso', 'PSO541G4074' => 'pso', 'QL01p031422' => 'qlo', 'QL01p031460' => 'qlo', 'QL07p048615' => 'qlo', 'QL07p048632' => 'qlo', 'QL08p059536' => 'qlo', 'RcHm_v2.0_Chr1g0367801' => 'rch', 'RcHm_v2.0_Chr3g0466401' => 'rch', 'RcHm_v2.0_Chr3g0466411' => 'rch', 'RcHm_v2.0_Chr3g0486941' => 'rch', 'RcHm_v2.0_Chr5g0065361' => 'rch', 'RcHm_v2.0_Chr5g0065391' => 'rch', 'RcHm_v2.0_Chr5g0065401' => 'rch', 'RcHm_v2.0_Chr5g0065411' => 'rch', 'RcHm_v2.0_Chr5g0065451' => 'rch', 'Rhsim01G0229600' => 'rsi', 'Rhsim01G0229900' => 'rsi', 'Rhsim03G0129400' => 'rsi', 'Rhsim04G0157800' => 'rsi', 'Rhsim05G0193800' => 'rsi', 'Rhsim06G0146200' => 'rsi', 'Rhsim09G0166900' => 'rsi', 'Rhsim13G0080800' => 'rsi', 'Rhsim13G0081000' => 'rsi', 'Rhsim13G0081200' => 'rsi', 'Rhsim13G0081300' => 'rsi', 'Rhsim13G0081400' => 'rsi', 'Sabra06G0066000' => 'sbr', 'Sabra08G0041800' => 'sbr', 'Sabra09G0022700' => 'sbr', 'Sabra10G0156200' => 'sbr', 'Sabra16G0146100' => 'sbr', 'SalBow3G1359' => 'sbo', 'SalBow3G4359' => 'sbo', 'SalBow4G1510' => 'sbo', 'SalBow4G3142' => 'sbo', 'SalBow6G2369' => 'sbo', 'Sc11g0007910' => 'sci', 'Sc12g0001420' => 'sci', 'Sc12g0001440' => 'sci', 'Sc20g0004990' => 'sci', 'Sc21g0005880' => 'sci', 'Sed0003978' => 'sed', 'Sed0009319' => 'sed', 'Sed0011978' => 'sed', 'Sed0012436' => 'sed', 'Sed0021170' => 'sed', 'Sed0022943' => 'sed', 'Sed0025539' => 'sed', 'SEGI_00484' => 'sgi', 'SEGI_04517' => 'sgi', 'SEGI_05108' => 'sgi', 'SEGI_17841' => 'sgi', 'SEGI_18806' => 'sgi', 'SEGI_20361' => 'sgi', 'SEGI_21301' => 'sgi', 'SEGI_22552' => 'sgi', 'SEGI_26807' => 'sgi', 'SGA_v2.0_scaffold203G41539' => 'sas', 'SGA_v2.0_scaffold221G42674' => 'sas', 'SGA_v2.0_scaffold2G01014' => 'sas', 'SGA_v2.0_scaffold35G14240' => 'sas', 'SGA_v2.0_scaffold41G15716' => 'sas', 'SHI38290' => 'shi', 'SMO203G0015' => 'smo', 'SMO203G0221' => 'smo', 'SMO271G0091' => 'smo', 'Solyc05g054410.4' => 'sly', 'Solyc06g005590.4' => 'sly', 'Solyc06g034073.1' => 'sly', 'Solyc06g076270.3' => 'sly', 'Solyc10g084800.2' => 'sly', 'Solyc12g027690.1' => 'sly', 'Solyc12g027705.1' => 'sly', 'Sopen04g005820' => 'spe', 'Sopen05g032900' => 'spe', 'Sopen06g001550' => 'spe', 'Sopen06g032700' => 'spe', 'Sopen10g034240' => 'spe', 'Sp1g06270' => 'spa', 'Sp3g07680' => 'spa', 'Sp3g10700' => 'spa', 'Sp5g08590' => 'spa', 'Sp5g15110' => 'spa', 'Sp6g21100' => 'spa', 'Sp6g21110' => 'spa', 'Sp6g30200' => 'spa', 'Sp6g40340' => 'spa', 'TAR623G1077' => 'tar', 'TAR633G1047' => 'tar', 'TAR636G0315' => 'tar', 'THA.LOC104799342' => 'tha', 'THA.LOC104799441' => 'tha', 'THA.LOC104799727' => 'tha', 'THA.LOC104800672' => 'tha', 'THA.LOC104806560' => 'tha', 'THA.LOC104810154' => 'tha', 'THA.LOC104810771' => 'tha', 'THA.LOC104810773' => 'tha', 'THA.LOC104816078' => 'tha', 'THA.LOC104816253' => 'tha', 'THA.LOC104823264' => 'tha', 'Thecc.05G038100' => 'tca', 'Thecc.05G038200' => 'tca', 'Thecc.09G319700' => 'tca', 'Thecc.09G319800' => 'tca', 'Thecc.10G036200' => 'tca', 'Thhalv10002472m.g' => 'esa', 'Thhalv10007062m.g' => 'esa', 'Thhalv10011058m.g' => 'esa', 'Thhalv10012893m.g' => 'esa', 'Thhalv10013086m.g' => 'esa', 'Thhalv10013498m.g' => 'esa', 'Thhalv10020283m.g' => 'esa', 'Thhalv10020702m.g' => 'esa', 'TPR.G15844' => 'tpr', 'TPR.G1687' => 'tpr', 'TPR.G1705' => 'tpr', 'TPR.G23578' => 'tpr', 'TPR.G23628' => 'tpr', 'TPR.G34287' => 'tpr', 'TPR.G3497' => 'tpr', 'TWI15G0927' => 'twi', 'TWI31G1035' => 'twi', 'TWI38G1431' => 'twi', 'TWI53G1163' => 'twi', 'TWI63G1690' => 'twi', 'TWI74G0783' => 'twi', 'TWI75G0926' => 'twi', 'TWI77G0529' => 'twi', 'TWI79G0413' => 'twi', 'TWI79G0986' => 'twi', 'unitig_32.g11823' => 'ugi', 'unitig_37.g12449' => 'ugi', 'unitig_747.g22039' => 'ugi', 'unitig_748.g8675' => 'ugi', 'vmacro03059' => 'vma', 'vmacro03060' => 'vma', 'vmacro07183' => 'vma', 'vmacro08648' => 'vma', 'vmacro10223' => 'vma', 'vmacro14544' => 'vma', 'vmacro20164' => 'vma', 'vmacro22503' => 'vma', 'VMungo1080G1107' => 'vmu', 'VMungo1080G1285' => 'vmu', 'VMungo1127G2242' => 'vmu', 'VMungo1383G0984' => 'vmu', 'VMungo1383G3226' => 'vmu', 'VMungo1383G3737' => 'vmu', 'Zm00001eb012300' => 'zma', 'Zm00001eb012310' => 'zma', 'Zm00001eb058990' => 'zma', 'Zm00001eb068360' => 'zma', 'Zm00001eb073970' => 'zma', 'Zm00001eb128280' => 'zma', 'Zm00001eb194000' => 'zma', 'Zm00001eb249010' => 'zma', 'Zm00001eb284920' => 'zma', 'Zm00001eb371040' => 'zma', 'Zm00001eb397700' => 'zma', 'Zm00001eb397710' => 'zma', 'Zm00001eb424820' => 'zma' ) $gf_id = 'HOM05D000758' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000758' ) $data_identifier = 'HOM05D000758' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 23, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 26, 'bol' => (int) 14, 'bra' => (int) 14, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 11, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 2, 'ccan' => (int) 4, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 10, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 11, 'dzi' => (int) 7, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 4, 'fan' => (int) 25, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 24, 'gra' => (int) 9, 'vvi' => (int) 5, 'han' => (int) 13, 'cav' => (int) 5, 'hma' => (int) 4, 'vpl' => (int) 3, 'sun' => (int) 5, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 6, 'lsa' => (int) 14, 'mes' => (int) 7, 'mpo' => (int) 2, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 14, 'nnu' => (int) 4, 'oeu' => (int) 10, 'osa' => (int) 3, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 6, 'ppa' => (int) 7, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 22, 'qlo' => (int) 5, 'rch' => (int) 9, 'rsi' => (int) 12, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 7, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 7, 'spe' => (int) 5, 'spa' => (int) 9, 'tar' => (int) 3, 'tha' => (int) 11, 'tca' => (int) 5, 'esa' => (int) 8, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424820' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1